Calculate the morgan fingerprint based on the k-mer graph data

Description

Generates fixed-length molecular fingerprint vectors from k-mer graphs using
Morgan algorithm with circular topology hashing.

Usage

kmer_fingerprint(graph,
    radius = 3,
    len = 4096);

Arguments

Details

Authors

Value

Integer array fingerprint where indices represent structural features

clr value class

• any kind

Examples

 let seqs = read.fasta("./proteins.fa");
 # create protein sequence graph based on k-mer(k=3)
 let g = kmer_graph(seqs, k = 3);
 
 for(let kmer in g) {
     print(kmer |> kmer_fingerprint());
 }