load a collection of the HMMER3 profile HMM model files for protein

load_hmmer {hmmer}

R Documentation

load a collection of the HMMER3 profile HMM model files for protein

Description

function annotation

Usage

load_hmmer(x);

Arguments

a character vector of the HMMER3 profile model file paths(*.hmm) for load into the protein annotator. this parameter also can be a directory path that contains a set of the HMMER3 profile model files, then all of the profile model files inside the given directory will be loaded.

this parameter also can be a file path of the hmmer model package archive file(*.zip) which is created by the save_hmmer api.

Authors

seqtoolkit

Value

a ProteinAnnotator object that contains the loaded HMMER3 profile models, which can be used for run the protein function annotation via the hmmer_search api;

this function returns NULL if the given input is an empty character vector.

clr value class

ProteinAnnotator

[Package hmmer version 1.0.0.0 Index]