Protein-Protein BLAST

blastp {blast+}

R Documentation

Protein-Protein BLAST

Description

Usage

blastp(query, subject, output,
    evalue = 0.001,
    n.threads = 2);

Arguments

query

the file path of the query protein fasta sequence file. [as string]

subject

the file path of the subject protein sequence database file. [as string]

output

the file path of the blastp alignment result output file. [as string]

evalue

the e-value threshold of the accepted blastp hits. [as double]

n.threads

the thread number for run the blastp program. [as integer]

env

the R# runtime environment object. [as Environment]

Authors

seqtoolkit

Value

a character value of the standard output log message of the blastp program run, and the alignment result data will be saved into the given output file.

clr value class

any kind

[Package blast+ version 1.0.0.0 Index]