align.gwANI {bioseq.blast} R Documentation

run the genome-wide average nucleotide identity(gwANI) calculation for

Description

a given nucleotide sequence collection

Usage

align.gwANI(multipleSeq);

Arguments

multipleSeq

a nucleotide fasta sequence collection for run the gwANI calculation, which can be a FastaFile object or a collection of the FastaSeq object. [as FastaFile]

Details

Authors

seqtoolkit

Value

a vector of the DataSet gwANI calculation result: each element contains the genome-wide average nucleotide identity value and its details of one sequence pair in the input sequence collection.

clr value class

Examples

[Package bioseq.blast version 1.0.0.0 Index]