HSP {bioseq.blast} R Documentation

get the high score region from the given alignment result

Description

Usage

HSP(align, cutoff, minW,
    as.dataframe = TRUE);

Arguments

align

[as SmithWaterman]

cutoff

[0,1] threshold. [as double]

minW

[as integer]

Details

Authors

seqtoolkit

Value

this function returns data object in these one of the listed data types: dataframe, HSP.

clr value class

Examples

[Package bioseq.blast version 1.0.0.0 Index]