gene_quantification

require(GCModeller); #' gene expression quantify tools imports "gene_quantification" from "rnaseq";

gene expression quantify tools

.NET clr function exports
read_featureCounts	read feature counts tsv table file
counts_matrix	make assemble of the reads sample counts as a gene expression matrix object
deseq2_norm	Apply DESeq2 Median of Ratios normalization method to the raw counts matrix.
edgeR_norm	Apply of the edgeR TMM factor normalization method to the raw counts matrix
edgeR_tmm	get edgeR TMM factors
gene_indexstats
read_genedata	read gene data csv table file
convert_to_tpm	make normalize of the feature counts data as TPM expression value
expression_data