{FastQ} R# Documentation

FastQ


require(GCModeller);

#' FastQ toolkit
imports "FastQ" from "rnaseq";

FastQ toolkit

FASTQ format Is a text-based format For storing both a biological sequence
(usually nucleotide sequence) And its corresponding quality scores. Both
the sequence letter And quality score are Each encoded With a Single ASCII
character For brevity. It was originally developed at the Wellcome Trust
Sanger Institute To bundle a FASTA formatted sequence And its quality data,
but has recently become the de facto standard For storing the output Of
high-throughput sequencing instruments such As the Illumina Genome
Analyzer.



.NET clr function exports
assemble

Do short reads assembling

quality_score

In FASTQ files, quality scores are encoded into a compact form,
which uses only 1 byte per quality value. In this encoding, the
quality score is represented as the character with an ASCII
code equal to its value + 33.


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