FastQ

require(GCModeller); #' FastQ toolkit imports "FastQ" from "rnaseq";

FastQ toolkit

FASTQ format Is a text-based format For storing both a biological sequence (usually nucleotide sequence) And its corresponding quality scores. Both the sequence letter And quality score are Each encoded With a Single ASCII character For brevity. It was originally developed at the Wellcome Trust Sanger Institute To bundle a FASTA formatted sequence And its quality data, but has recently become the de facto standard For storing the output Of high-throughput sequencing instruments such As the Illumina Genome Analyzer.

.NET clr function exports
illumina_fastQ_id	Parse the Illumina FastQ id from the reads title
read.fastq	read the fastq file
merge_raw	merge the raw fastq data
write.fastq
random_sampling	make reads data random sampling
assemble	Do short reads assembling
quality_score	In FASTQ files, quality scores are encoded into a compact form, which uses only 1 byte per quality value. In this encoding, the quality score is represented as the character with an ASCII code equal to its value + 33.
random_expression_weights	generates the random expression weights for generates the simulated reads data
simulate_reads	Mock a fastq reads file from a given set of the reference sequence.

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