Calculate the sum of the sample data with time-series information across all time points to obtain the area under the curve (AUC) of the time-series curve.

sample_auc {geneExpression}

R Documentation

Calculate the sum of the sample data with time-series information across all time points to obtain the area under the curve (AUC) of the time-series curve.

Description

Usage

sample_auc(x, sampleinfo,
    sample = "sample");

Arguments

[as Matrix]

sampleinfo

the sample time-series information data, which can be a vector of the SampleInfo object, a dataframe object or a pipeline object that produces a set of the @T:SMRUCC.genomics.GCModeller.Workbench.ExperimentDesigner.SampleInfo

sample

the property name of the time point information in the given sampleinfo data, by default is the sample. [as string]

env

[as Environment]




        Details

        

        Authors

        phenotype_kit

        Value

        a new expression matrix object that each sample column is the sum value(AUC) of the sample columns in the corresponding time point, the tag of the generated matrix is AUC(time);

this function returns a R# error message object if the given sample information data can not be cast to a collection of the SampleInfo data.
clr value class
any kind

        Examples

        

        
        [Package geneExpression version 1.0.0.0 Index]