limma_impactsort {geneExpression} R Documentation

make the impact sort of the limma differential expression analysis result

Description

Usage

limma_impactsort(x,
    top = 2147483647,
    logfc.impact = FALSE,
    class = NULL,
    names = NULL);

Arguments

x

the limma result data, which can be a vector of the @T:SMRUCC.genomics.Analysis.HTS.DataFrame.LimmaTable

top

[as integer]

logfc.impact

[as boolean]

class

the id class data, example as: list(class1 = c(...), class2 = c(...), class3 = c(...))

this parameter can also be provided in the format of list(id1 = "class1", id2 = "class2", ...). [as list]

names

[as list]

env

[as Environment]

Details

Authors

phenotype_kit

Value

a vector of the ImpactResult data object that is sorted by the impact value in descending order: the total impact value of each gene across all of the input limma result groups, the max impact value and the corresponding top_group, and the class label and the name of each gene if the class/names parameter is provided;

this function returns a R# error message object if the input data can not be cast to a collection of the LimmaTable data.

clr value class

Examples

[Package geneExpression version 1.0.0.0 Index]