This function performs clustering analysis of time course data.

expression.cmeans_pattern {geneExpression}

R Documentation

This function performs clustering analysis of time course data.

Description

Calculate gene expression pattern by cmeans algorithm.

Usage

expression.cmeans_pattern(matrix,
    dim = "3,3",
    fuzzification = 2,
    threshold = 0.001);

Arguments

matrix

the gene expression matrix object which could be generated by @M:phenotype_kit.geneExpression.loadExpression(System.Object,System.String[],System.Boolean,System.Boolean,System.Boolean,SMRUCC.Rsharp.Runtime.Environment). [as Matrix]

dim

fuzzification

[as double]

threshold

[as double]

env

[as Environment]




        Details

        

        Authors

        phenotype_kit

        Value

        an ExpressionPattern object that contains the cmeans clustering result of the input gene expression data: the partition patterns of the expression data and the membership value of each gene feature to each pattern.
clr value class
ExpressionPattern

        Examples

        

        
        [Package geneExpression version 1.0.0.0 Index]