deg.t.test {geneExpression} R Documentation

do t-test across specific analysis comparision

Description

Usage

deg.t.test(x, sampleinfo, treatment, control,
    level = 1.5,
    pvalue = 0.05,
    FDR = 0.05);

Arguments

x

[as Matrix]

sampleinfo

[as SampleInfo]

treatment

group name of the treatment group. [as string]

control

group name of the control group. [as string]

level

log2FC cutoff level. [as double]

pvalue

the t-test pvalue cutoff. [as double]

FDR

the FDR cutoff. [as double]

env

[as Environment]

Details

Authors

phenotype_kit

Value

this function returns data object of type DEP_iTraq[].

clr value class

Examples

[Package geneExpression version 1.0.0.0 Index]