do t-test across specific analysis comparision

deg.t.test {geneExpression}

R Documentation

deg.t.test(x, sampleinfo, treatment, control,
    level = 1.5,
    pvalue = 0.05,
    FDR = 0.05);

a gene expression matrix object. [as Matrix]

sampleinfo

the sample group information data, which is used for get the sample id list of the treatment group and the control group. [as SampleInfo]

treatment

group name of the treatment group. [as string]

control

group name of the control group. [as string]

level

log2FC cutoff level. [as double]

pvalue

the t-test pvalue cutoff. [as double]

FDR

the FDR cutoff. [as double]

env

the R# runtime environment object. [as Environment]

phenotype_kit

a vector of the DEP_iTraq deg result data of the t-test analysis, which is filtered by the given log2FC, p-value and FDR cutoff value.

[Package geneExpression version 1.0.0.0 Index]