do t-test across specific analysis comparision

deg.t.test {geneExpression}

R Documentation

deg.t.test(x, sampleinfo, treatment, control,
    level = 1.5,
    pvalue = 0.05,
    FDR = 0.05);

sampleinfo

treatment

[as string]

control

[as string]

level

[as double]

pvalue

[as double]

FDR

[as double]

env

phenotype_kit

a vector of the DEP_iTraq deg result data of the t-test analysis, which is filtered by the given log2FC, p-value and FDR cutoff value.

[Package geneExpression version 1.0.0.0 Index]