set deg class label

deg.class {geneExpression}

R Documentation

set deg class label

Description

Usage

deg.class(deg,
    class.labels = NULL,
    logFC = 1,
    pval.cutoff = 0.05);

Arguments

deg

a vector of the DEGModel deg result data for set the class label. [as DEGModel]

class.labels

set deg class label manually;

if this parameter is not specified, then the class label will be evaluated from the log2 fold change and the p-value of each deg result data automatically: the deg data will be labelled as sig when its p-value is less than the pval_cutoff and the absolute value of its log2 fold change is greater than the logFC cutoff, otherwise it will be labelled as not_sig.

logFC

the log2 fold change cutoff value for evaluate the deg class label. [as double]

pval.cutoff

the p-value cutoff value for evaluate the deg class label. [as double]

Authors

phenotype_kit

Value

a new vector of the DEGModel deg result data that the class property of each deg data has been assigned.

clr value class

DEGModel

[Package geneExpression version 1.0.0.0 Index]