create the abundance matrix from a collection of the metagenomics

as.abundance_matrix {geneExpression}

R Documentation

create the abundance matrix from a collection of the metagenomics

Description

abundance data

Usage

as.abundance_matrix(samples,
    normalized = FALSE);

Arguments

samples

a tuple list of the abundance data: the slot key of the list is the sample id and the slot value is the abundance data of the corresponding sample, which can be a collection of the @T:SMRUCC.genomics.ComponentModel.IExpressionValue

normalized

[as boolean]

env

[as Environment]




        Details

        a warning message will be pushed into the R# environment message buffer if the abundance data of some sample is nothing, and such kind of the sample will be skipped, an NotImplementedException will be thrown if the input data is not a tuple list object or the abundance data type is not supported.

        
Authors

        phenotype_kit

        Value

        a Matrix abundance matrix object that the rows are the taxonomy features and the columns are the input samples.
clr value class
Matrix

        Examples

        

        
        [Package geneExpression version 1.0.0.0 Index]