cast the genomics sequence as kmer based bloom filter model

as.bloom_filter {kmers}

R Documentation

as.bloom_filter(genomics,
    ncbi.taxid = 0,
    k = 35,
    fpr = 0.001,
    spanSize = 524288000);

genomics

ncbi.taxid

[as integer]

fpr

[as double]

env

metagenomics_kit

this function returns data object of type KmerBloomFilter.

[Package kmers version 1.0.0.0 Index]