OTU.taxonomy {gast} R Documentation

assign OTU its taxonomy result

Description

Usage

OTU.taxonomy(blastn, OTUs, taxonomy,
    min.pct = 0.97,
    gast.consensus = FALSE);

Arguments

blastn

a collection of the alignment @T:SMRUCC.genomics.Interops.NCBI.Extensions.LocalBLAST.BLASTOutput.BlastPlus.Query that parsed from the ncbi blastn alignment result text file.

taxonomy

a collection of the otu_taxonomy data. [as list]

Details

Authors

metagenomics_kit

Value

this function returns data object of type pipeline.

clr value class

Examples

[Package gast version 1.0.0.0 Index]