assign OTU its taxonomy result

OTU.taxonomy {gast}

R Documentation

assign OTU its taxonomy result

Description

Usage

OTU.taxonomy(blastn, OTUs, taxonomy,
    min.pct = 0.97,
    gast.consensus = FALSE);

Arguments

blastn

a collection of the alignment @T:SMRUCC.genomics.Interops.NCBI.Extensions.LocalBLAST.BLASTOutput.BlastPlus.Query

taxonomy

a collection of the @T:SMRUCC.genomics.Analysis.Metagenome.greengenes.otu_taxonomy. [as list]




        Details

        

        Authors

        metagenomics_kit

        Value

        this function returns data object of type pipeline.clr value class
pipeline

        Examples

        

        
        [Package gast version 1.0.0.0 Index]