core_microbiome {OTU_table} R Documentation

evaluate the core microbiome species across all sample data

Description

Usage

core_microbiome(x,
    prevalence = 0.8,
    abundance = 0.0001,
    detectionLimit = 1E-05,
    sampleinfo = NULL,
    top.n = NULL);

Arguments

x

prevalence

[as double]

abundance

[as double]

detectionLimit

[as double]

sampleinfo

top.n

[as integer]

env

[as Environment]

Details

Authors

metagenomics_kit

Value

this function returns data object of type OTUTable.

clr value class

Examples

[Package OTU_table version 1.0.0.0 Index]