Parse the kegg pathway node highlight information

parse.highlight_tuples {report.utils}

R Documentation

Parse the kegg pathway node highlight information

Description

Usage

parse.highlight_tuples(x,
    default = "red");

Arguments

should be a character string that contains the pathway nodes id and optional highligh color for make the kegg pathway map rendering. value should be in formats of: "K00001:blue;K00002:red;C00001:green" where the first part is the kegg id, the second part is the highlight color. or just a list of the kegg id without highlight color, such as: "K00001;K00002;C00001" The default color is "red" if the highlight color is not specified. [as string]

default

the default color for the hightlights. [as string]

Authors

kegg_kit

Value

a tuple list that contains the highlight information, such as:

 list(K00001 = "blue", K00002 = "red", C00001 = "green");

clr value class

any kind

[Package report.utils version 1.0.0.0 Index]