assemble_background {profiles} R Documentation

create gsea background based on the reference kegg map data

Description

Usage

assemble_background(kegg, ko,
    multiple.omics = FALSE,
    tcode = NULL,
    map.set = NULL);

Arguments

kegg

a collection of the reference kegg maps. [as Map]

ko

a id mapping from kegg ko to gene id. [as list]

tcode

the kegg organism code. [as string]

multiple.omics

the compound id will be keeps if multiple omics flag is TRUE. [as boolean]

Details

Authors

kegg_kit

Value

this function returns data object of type Background.

clr value class

Examples

[Package profiles version 1.0.0.0 Index]