Convert the limma differential analysis result table into the GSVA difference objects.

matrix_to_diff {GSVA}

R Documentation

matrix_to_diff(diff,
    pathId = "pathNames",
    t = "t",
    pvalue = "pvalue");

diff

the dataframe object of the limma differential analysis result. [as dataframe]

pathId

the column name of the pathway id in the given dataframe. Default pathNames. [as string]

the column name of the t statistics. Default t. [as string]

pvalue

the column name of the p-value. Default pvalue. [as string]

gseakit

an array of the GSVADiff objects.

[Package GSVA version 1.0.0.0 Index]