fisher {GSEA} R Documentation

Fisher exact test for the enrichment of a single gene set term.

Description

Usage

fisher(list, geneSet, background,
    term = "unknown");

Arguments

list

the gene id list that are observed in the target term. [as string]

geneSet

all member gene ids of the target term. [as string]

background

the background size information, it could be an integer value to indicates that the total unique size of the enrichment background or a unique id character vector that contains all member information of the background.

term

the term id (or the term name) that will be written into the result object. Default unknown. [as string]

env

the R# runtime environment. [as Environment]

Details

Authors

gseakit

Value

a EnrichmentResult object of the given term.

clr value class

Examples


[Package GSEA version 1.0.0.0 Index]