enrichment.go {GSEA} R Documentation

Do the GO (Gene Ontology) GSEA enrichment analysis.

Description

Usage

enrichment.go(background, geneSet, go,
    showProgress = TRUE);

Arguments

background

the GSEA background model that contains the GO terms, for example the model created by dag.background. [as Background]

geneSet

the gene id list for the enrichment analysis. [as string]

go

the go database object can be the raw go obo data or the DAG graph model.

showProgress

prints the progress message? Default TRUE. [as boolean]

env

the R# runtime environment. [as Environment]

Details

Authors

gseakit

Value

an array of the EnrichmentResult objects, which is sorted by the FDR value in ascending order.

clr value class

Examples

[Package GSEA version 1.0.0.0 Index]