compounds.network {cytoscape.kegg} R Documentation

Create kegg metabolism network based on the given metabolite compound data.

Description

Usage

compounds.network(reactions, compounds,
    enzymes = NULL,
    filterByEnzymes = FALSE,
    extended = FALSE,
    strictReactionNetwork = FALSE,
    enzymeBridged = TRUE,
    random.layout = TRUE);

Arguments

reactions

The kegg br08201 reaction database. [as ReactionTable]

compounds

Kegg compound id list. [as string]

Details

Authors

cytoscape_toolkit

Value

this function returns data object of type NetworkGraph.

clr value class

Examples

[Package cytoscape.kegg version 1.0.0.0 Index]