replication_origin.predict {sigma_difference} R Documentation

Locate the candidate replication origin (oriC) and terminus positions from

Description

the GC skew profile: the sign-flip sites of the cumulative skew curve.<br /> A single bidirectional replication origin produces one sign flip at oriC;<br /> genomes with many origins (e.g. some archaea) show no significant<br /> asymmetry at all.

Usage

replication_origin.predict(skew);

Arguments

skew

the GC skew profile of SigmaDifference.GenomeGcSkew(). [as StrandSkew]

Details

Authors

comparative_toolkit

Value

the window site positions where the skew changes sign

clr value class

Examples


[Package sigma_difference version 1.0.0.0 Index]