| measure_homogeneity {sigma_difference} |
R Documentation |
Measure the homogeneity property of the genome partition segments against
Description
the dnaA-gyrB ruler segment of the reference genomes in batch.
Usage
measure_homogeneity(PartitionData, RuleSource);
Arguments
PartitionData
the partition segments of all of the genomes. [as iterates(PartitioningData)]
RuleSource
The original GenBank download data directory which should contains the *.ptt file for parsing the ruler segment between the dnaA and gyrB genes and the *.fna file for parsing the genome nucleotide fasta sequence. [as string]
Details
Authors
comparative_toolkit
Value
the data frame with one ruler distance column per reference genome
clr value class
Examples
[Package
sigma_difference version 1.0.0.0
Index]