codon.usage_profile {sigma_difference} R Documentation

Build the codon usage frequency profile c(x, y, z) of a gene collection

Description

(the reference class C of the B(F|C) codon bias measurement).

Usage

codon.usage_profile(genes,
    name = NULL,
    excludeStopCodons = TRUE);

Arguments

genes

the CDS gene sequences of the gene collection. [as FastaFile]

name

the profile name. [as string]

excludeStopCodons

exclude the stop codons from the frequency total. [as boolean]

Details

Authors

comparative_toolkit

Value

the codon usage profile

clr value class

Examples

[Package sigma_difference version 1.0.0.0 Index]