codon.signature_profile {sigma_difference} R Documentation

Build the site-specific codon signature profile of a gene collection:

Description

the odds ratios rhoXY(1,2) / rhoYZ(2,3) / rhoXZ(1,3) within the codons<br /> and rhoZW(3,4) at the codon junctions, distinguished from the global<br /> genome signature.

Usage

codon.signature_profile(genes,
    name = NULL);

Arguments

genes

the CDS gene sequences of the gene collection. [as FastaFile]

name

the profile name. [as string]

Details

Authors

comparative_toolkit

Value

the codon signature profile

clr value class

Examples

[Package sigma_difference version 1.0.0.0 Index]