Build the codon usage profile of the ribosomal protein gene set (the

alien.genes.rp_reference {sigma_difference}

R Documentation

highly expressed reference set RP of the 2D threshold method).

alien.genes.rp_reference(genes,
    pattern = "ribosomal protein");

genes

all CDS gene sequences of the genome under study. [as FastaFile]

pattern

the ribosomal protein product name matching pattern in the fasta header. [as string]

comparative_toolkit

the ribosomal protein codon usage profile, or Nothing when no ribosomal protein gene was matched

[Package sigma_difference version 1.0.0.0 Index]