KaryotypeEntry {SMRUCC.genomics.Visualize.Circos.Karyotype}

.NET clr documentation

KaryotypeEntry

Description

The ideogram using karyotype file to define the genome skeleton information, which defines the name, size and color of chromosomes.

A simple karyotype with 5 chromosomes:

 chr1 5Mb
 chr2 10Mb
 chr3 20Mb
 chr4 50Mb
 chr5 100Mb

The format Of this file Is

 chr - CHRNAME CHRLABEL START End COLOR

In data files, chromosomes are referred To by CHRNAME. On the image, they are labeled by CHRLABEL

Colors are taken from the spectral Brewer palette. To learn about Brewer palettes, see (www.colorbrewer.org)[http://www.colorbrewer.org]

Declare

            
# namespace SMRUCC.genomics.Visualize.Circos.Karyotype
export class KaryotypeEntry extends iterates(any) kind {
   # Display name title labels
   chrLabel: string;
   # Id
   chrName: string;
   color: string;
   end: integer;
   Properties: list;
   start: integer;
}

        

.NET clr type reference tree

1. this class extends from iterates(any) kind class: iterates(any) kind

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