PalindromeLoci {SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.Topologically}

.NET clr documentation

PalindromeLoci

Description

Mirror 或者 Palindrome 位点的搜索结果的csv文件存储模型

Declare

            
# namespace SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.Topologically
export class PalindromeLoci extends Contig {
   Data: list;
   Length: integer;
   # 特殊的位点序列
   Loci: string;
   Mirror: integer;
   # 和PalindromeLoci.Loci相对应的反向序列
   MirrorSite: string;
   # Location.right
   PalEnd: integer;
   # 回文序列，在生成Mirror镜像位点数据的时候是使用这个和PalindromeLoci.Loci组合产生的
   Palindrome: string;
   # sequence data for loci value @P:SMRUCC.genomics.SequenceModel.NucleotideModels.Contig.MappingLocation(System.Boolean).
   #  (理论上这个序列属性的值应该是等于PalindromeLoci.Loci + PalindromeLoci.MirrorSite)
   SequenceData: string;
   # Location.left
   Start: integer;
}

        

.NET clr type reference tree

1. this class extends from Contig class: Contig
2. use by property member Data: list

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