MotifMatch {SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns}

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MotifMatch

Description

motif model sequence site matches result

A single TFBS match found by scanning a sequence with a motif PWM.

Declare

            
# namespace SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns
export class MotifMatch {
   ends: integer;
   identities: double;
   motif: string;
   # P-value under the null (background) model: P(random background window scores >= observed score).
   pvalue: double;
   score1: double;
   score2: double;
   seeds: string;
   # 
the motif matched site sequence
   # 
   # The matched sequence fragment, read 5'->3' on the strand it was found (i.e. reverse-complemented for '-' strand matches).
   segment: string;
   start: integer;
   # Strand: '+' for forward, '-' for reverse complement.
   strand: string;
   title: string;
}

        

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