HSP {SMRUCC.genomics.Analysis.SequenceTools}

.NET clr documentation

HSP

Description

matched high score aligned region in two sequence pairewise alignment result

对LocalHSPMatch`1的XML文件保存文件格式对象

Declare

            
# namespace SMRUCC.genomics.Analysis.SequenceTools
export class HSP extends Match {
   fromA: integer;
   fromB: integer;
   # length of the hit fragment size
   LengthHit: integer;
   # length of the query fragment size
   LengthQuery: integer;
   Query: string;
   QueryLength: integer;
   score: double;
   Subject: string;
   SubjectLength: integer;
   toA: integer;
   toB: integer;
}

        

.NET clr type reference tree

1. this class extends from Match class: Match

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