Stockholm {SMRUCC.genomics.Analysis.SequenceAlignment.MSA.Tabular}

.NET clr documentation

Stockholm

Description

Tabular MSA file

Stockholm format is a Multiple sequence alignment format used by Pfam and Rfam to disseminate protein and RNA sequence alignments. The alignment editors Ralee and Belvu support Stockholm format as do the probabilistic database search tools, Infernal and HMMER, and the phylogenetic analysis tool Xrate.

Declare

            
# namespace SMRUCC.genomics.Analysis.SequenceAlignment.MSA.Tabular
export class Stockholm {
   comment: string;
   metadata: list;
   msa: MSAOutput;
   seq_cons: string;
   seq_source: list;
}

        

.NET clr type reference tree

1. use by property member metadata: list
2. use by property member msa: MSAOutput
3. use by property member seq_source: list

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