{OBO} R# Documentation

OBO


require(GCModeller);

#' The Open Biological And Biomedical Ontology (OBO) Foundry
imports "OBO" from "annotationKit";

The Open Biological And Biomedical Ontology (OBO) Foundry



.NET clr function exports
open.obo

open the ontology obo file reader

read.obo

parse the gene ontology obo file

obo_terms
ontologyTree
ontologyNodes
ontologyLeafs
lineage_term
set_namespace

set the namespace of the obo terms

filter.is_obsolete

removes all terms which is is_obsolete

filter_properties

make data filter of the property_value in a term

filter_direct_parent

removes terms that associated with the given terms id directly

set_remarks

set remakrs comment text into the header of the obo file object.

set_propertyValue

set property_value list to a term or obo file headers

write.obo

write ontology file as ascii plant text file


[Document Index]