open.obo | open the ontology obo file reader |
read.obo | parse the gene ontology obo file |
obo_terms | |
ontologyTree | |
ontologyNodes | |
ontologyLeafs | |
lineage_term | |
set_namespace | set the namespace of the obo terms |
filter.is_obsolete | removes all terms which is |
filter_properties | make data filter of the |
filter_direct_parent | removes terms that associated with the given terms id directly |
set_remarks | set remakrs comment text into the header of the obo file object. |
set_propertyValue | set property_value list to a term or obo file headers |
write.obo | write ontology file as ascii plant text file |