| {BioCyc} | R# Documentation |
require(GCModeller);
#' The BioCyc database collection is an assortment of organism specific Pathway/Genome Databases (PGDBs)
imports "BioCyc" from "annotationKit";
The BioCyc database collection is an assortment of organism specific Pathway/Genome Databases (PGDBs) that provide reference to genome and metabolic pathway information for thousands of organisms. As of July 2023, there were over 20,040 databases within BioCyc.[2] SRI International,[3] based in Menlo Park, California, maintains the BioCyc database family.
| open.biocyc | open a directory path as the biocyc workspace |
| getCompounds | get compounds list data from a given biocyc workspace context |
| getReactions | |
| getGenes | |
| getProteins | |
| formula | get formula string of the given object model |
| db_links | get external database cross reference id of current metabolite compound object |
| createBackground | Create pathway enrichment background model |