export_profiles {linear} R Documentation

Run the perturbation experiment for a set of genes and save the profiles as a csv file.

Description

Usage

export_profiles(model, genes, file,
    mode = "knockdown");

Arguments

model

the perturbation engine that is created via elastic_model. [as ElasticNet]

genes

the target gene ids

file

the output csv file, its folder will be created automatically. [as string]

mode

knockout, knockdown (default) or overexpress. [as string]

env

the R# runtime environment object. [as Environment]

Details

The first column is the gene id, the second column is the control (wildtype) profile, and the following columns are the mutant profiles of the given perturbations.

Authors

TRNtoolkit

Value

TRUE when the file has been written successfully

clr value class

Examples

[Package linear version 1.0.0.0 Index]