{WGCNA}

R# Documentation

WGCNA

require(GCModeller); #' Workflow for make TRN data model based on the WGCNA co-expression network and TF id list. imports "WGCNA" from "TRNtoolkit";

Workflow for make TRN data model based on the WGCNA co-expression network and TF id list.

.NET clr type export
GRN_opts: GRNBuildOptions	基因表达调控先验网络（PriorNetwork）构建流水线的配置对象

.NET clr function exports
shapeTRN	filter regulation network by WGCNA result weights
interations	append protein iteration network based on the WGCNA weights.
expr_cor	Get the correlation matrix of the given expression data matrix, and then calculate the correlation value and p-value of the given id1 and id2.
read_wgcna_edges	read network edges table which is save via igraph package
prior_network	Build bnlearn prior network based on the WGCNA co-expression network and TF id list.
build_grn	build the GRN prior network from the expression matrix or the cached bicor correlation store.
string_links	locate the STRING protein interaction data files inside a STRING database folder and attach them to the GRN pipeline options.

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