Do enrichment based on metpa background model

metpa_enrich {GCModeller}

R Documentation

Do enrichment based on metpa background model

Description

Usage

metpa_enrich(data, metpa,
    log2FC = 'log2(FC)',
    id = 'kegg');

Arguments

data

a given set of the target for do enrichment analysis, this parameter value could be a character vector which is stands for the kegg id character vector or a dataframe object that contains the data annotation fields and the log2fc value.

metpa

the metabolic network pathway model for used as the enrichment background data to run enrichment analysis. this parameter value should be a CLR object that read from file.

log2FC

the field name for get the log2FC value, the log2FC value will be used for do colorful url encoded. And this parameter option only works when the input data is a dataframe object.

the field name for get the target idset data for run the enrichment analysis. And this parameter option only works when the input data is a dataframe object.

Authors

xieguigang

Value

A dataframe object that contains the enrichment analysis result, value nothing will be return if the given kegg idset is empty.

[Package GCModeller version 1.1.0-beta Index]