VirtualCellFBA(models, obj.rxns,
default.lb = -1000,
default.ub = 1000,
flux.bounds = 'list'(),
temp = './.tmp/');
models
a set of the virtual cell model CLR object to modelling of the FBA stoichiometric matrix
obj.rxns
A character vector specifying the reaction flux IDs (a subset of the column names of \code{S_df}) to be maximized. If multiple reactions are provided, their combined flux is maximized.
temp
temp dir for save the temp workspace files.
default.lb
A numeric value specifying the default lower bound for every metabolic reaction flux. Defaults to \code{-1000} (assumes reversible reactions by default).
default.ub
A numeric value specifying the default upper bound for every metabolic reaction flux. Defaults to \code{1000}.
flux.bounds
A named list used to tweak specific reaction flux bounds. The name of each element should be the reaction ID, and the value should be a numeric vector of length 2 containing the lower and upper bounds: \code{list("flux_id" = c(lb, ub))}.