CompoundNetwork {GCModeller} R Documentation

Create kegg compound network

Description

@param compoundsId a dataframe object that contains the kegg compound cid as the node item in the network graph data. there are fields in this dataframe that must be included:

  1. kegg_id: is the kegg compound cid
  2. weight: apply for measure the node size

Usage

CompoundNetwork(compoundsId,
    make.pathway.cluster = TRUE);

Arguments

make.pathway.cluster

make node cluster info via pathway maps information?

Details

Authors

xieguigang

Value

a network graph object model, which can be export as table file or run network visualization rendering in the downstream data analysis.

Examples

[Package GCModeller version 1.1.0-beta Index]